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Population-wise Labeling of Sulcal Graphs using Multi-graph Matching

arXiv.org Artificial Intelligence

Population-wise matching of the cortical fold is necessary to identify biomarkers of neurological or psychiatric disorders. The difficulty comes from the massive interindividual variations in the morphology and spatial organization of the folds. This task is challenging at both methodological and conceptual levels. In the widely used registration-based techniques, these variations are considered as noise and the matching of folds is only implicit. Alternative approaches are based on the extraction and explicit identification of the cortical folds. In particular, representing cortical folding patterns as graphs of sulcal basins-termed sulcal graphs-enables to formalize the task as a graph-matching problem. In this paper, we propose to address the problem of sulcal graph matching directly at the population level using multi-graph matching techniques. First, we motivate the relevance of multi-graph matching framework in this context. We then introduce a procedure to generate populations of artificial sulcal graphs, which allows us benchmarking several state of the art multi-graph matching methods. Our results on both artificial and real data demonstrate the effectiveness of multi-graph matching techniques to obtain a population-wise consistent labeling of cortical folds at the sulcal basins level.


Dialogue Meaning Representation for Task-Oriented Dialogue Systems

arXiv.org Artificial Intelligence

Dialogue meaning representation formulates natural language utterance semantics in their conversational context in an explicit and machine-readable form. Previous work typically follows the intent-slot framework, which is easy for annotation yet limited in scalability for complex linguistic expressions. A line of works alleviates the representation issue by introducing hierarchical structures but challenging to express complex compositional semantics, such as negation and coreference. We propose Dialogue Meaning Representation (DMR), a pliable and easily extendable representation for task-oriented dialogue. Our representation contains a set of nodes and edges to represent rich compositional semantics. Moreover, we propose an inheritance hierarchy mechanism focusing on domain extensibility. Additionally, we annotated DMR-FastFood, a multi-turn dialogue dataset with more than 70k utterances, with DMR. We propose two evaluation tasks to evaluate different dialogue models and a novel coreference resolution model GNNCoref for the graph-based coreference resolution task. Experiments show that DMR can be parsed well with pre-trained Seq2Seq models, and GNNCoref outperforms the baseline models by a large margin.


Assessing the quality of sources in Wikidata across languages: a hybrid approach

arXiv.org Artificial Intelligence

Wikidata is one of the most important sources of structured data on the web, built by a worldwide community of volunteers. As a secondary source, its contents must be backed by credible references; this is particularly important as Wikidata explicitly encourages editors to add claims for which there is no broad consensus, as long as they are corroborated by references. Nevertheless, despite this essential link between content and references, Wikidata's ability to systematically assess and assure the quality of its references remains limited. To this end, we carry out a mixed-methods study to determine the relevance, ease of access, and authoritativeness of Wikidata references, at scale and in different languages, using online crowdsourcing, descriptive statistics, and machine learning. Building on previous work of ours, we run a series of microtasks experiments to evaluate a large corpus of references, sampled from Wikidata triples with labels in several languages. We use a consolidated, curated version of the crowdsourced assessments to train several machine learning models to scale up the analysis to the whole of Wikidata. The findings help us ascertain the quality of references in Wikidata, and identify common challenges in defining and capturing the quality of user-generated multilingual structured data on the web. We also discuss ongoing editorial practices, which could encourage the use of higher-quality references in a more immediate way. All data and code used in the study are available on GitHub for feedback and further improvement and deployment by the research community.


Incremental embedding for temporal networks

arXiv.org Machine Learning

Many vital tasks in network analysis involve prediction over edges and nodes. For instance in node classification, we aim at predicting most likely node's label. In a social network, this might be an interest or preference of the user, or in citation network, the research area the paper belongs to [7]. In link prediction, we intend to model the existence of a link between pair of nodes. Predicted links in social networks may denote real-life friends and in citation networks related but unmentioned references. It is recently recognized, that the majority of real-world networks are naturally dynamic. It means they evolve over time and nodes as well as links can appear or disappear. We know so far, that considering temporal information about the network allows their better understanding and modeling [9,16], especially for supervised machine learning tasks.


Multi-centrality Graph Spectral Decompositions and their Application to Cyber Intrusion Detection

arXiv.org Machine Learning

Many modern datasets can be represented as graphs and hence spectral decompositions such as graph principal component analysis (PCA) can be useful. Distinct from previous graph decomposition approaches based on subspace projection of a single topological feature, e.g., the Fiedler vector of centered graph adjacency matrix (graph Laplacian), we propose spectral decomposition approaches to graph PCA and graph dictionary learning that integrate multiple features, including graph walk statistics, centrality measures and graph distances to reference nodes. In this paper we propose a new PCA method for single graph analysis, called multi-centrality graph PCA (MC-GPCA), and a new dictionary learning method for ensembles of graphs, called multi-centrality graph dictionary learning (MC-GDL), both based on spectral decomposition of multi-centrality matrices. As an application to cyber intrusion detection, MC-GPCA can be an effective indicator of anomalous connectivity pattern and MC-GDL can provide discriminative basis for attack classification.


Scalable Latent Tree Model and its Application to Health Analytics

arXiv.org Machine Learning

Latent tree graphical models are a popular class of latent variable models, where a probability distribution involving observed and hidden variables are Markovian on a tree. Due to the fact that structure of (observable and hidden) variable interactions are approximated as a tree, inference on latent trees can be carried out exactly through a simple belief propagation [Pea88]. Therefore, latent tree graphical models present a good tradeoff between model accuracy and computational complexity. They are applicable in many domains, where it is natural to expect hierarchical or sequential relationships among the variables (through a hidden-Markov model). For instance, latent tree models have been employed for phylogenetic reconstruction [DEKM99], object recognition [CTW12a, CTW12b] and human pose estimation [WL13]. In this paper, we use latent tree model for discovering a hierarchy among diseases based on comorbidities exhibited in patients' health records, i.e. co-occurrences of diseases in patients. In particular, two large healthcare datasets of 30K and 1.6M patients are used to build the latent disease trees, where clinically meaningful disease clusters are identified as shown in fig 3 and 4. The task of learning a latent tree models consists of two parts: learning the tree structure, and learning the parameters of the tree. There exist many challenges which prohibit efficient or guaranteed learning of the latent tree graphical model, which will be addressed in this paper: 1. The location and the number of latent variables are hidden and the marginalized graph over the observable variables no longer conforms to a tree structure.


Faster Gaussian Summation: Theory and Experiment

arXiv.org Machine Learning

We provide faster algorithms for the problem of Gaussian summation, which occurs in many machine learning methods. We develop two new extensions - an O(Dp) Taylor expansion for the Gaussian kernel with rigorous error bounds and a new error control scheme integrating any arbitrary approximation method - within the best discretealgorithmic framework using adaptive hierarchical data structures. We rigorously evaluate these techniques empirically in the context of optimal bandwidth selection in kernel density estimation, revealing the strengths and weaknesses of current state-of-the-art approaches for the first time. Our results demonstrate that the new error control scheme yields improved performance, whereas the series expansion approach is only effective in low dimensions (five or less).